PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.23X2M
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 225aa    MW: 25302.4 Da    PI: 7.2466
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.23X2MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-20109143135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+ktLCnaCG++y+k+++
  Araip.23X2M 109 CANCDTTSTPLWRNGPRGPKTLCNACGIRYKKEER 143
                  ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-18103155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-14105147No hitNo description
PROSITE profilePS5011414.075106139IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-17107143IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.50E-14108140No hitNo description
PfamPF003206.5E-18109143IPR000679Zinc finger, GATA-type
PROSITE patternPS003440109134IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MMNHCCSNSN SQDHVMGTCK CGMFPTPYGD DYYYGDPNSY SFTPSSSSLS WSSVDCTLSL  60
GTPSTRFSED EDRRTRHHHH ERRSKQNPHH SEAKASKGSD GDAFFSRRCA NCDTTSTPLW  120
RNGPRGPKTL CNACGIRYKK EERRASATAA ATTTTVTNSG GEMEPVAAHM YGRNNNNSWY  180
YTNSQGNNNG ELRFMDYDAN DDMDPFPSWR LNAADRTNLV HDFTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174145.11e-169PREDICTED: GATA transcription factor 19
SwissprotQ8LC793e-40GAT18_ARATH; GATA transcription factor 18
TrEMBLV7CJ486e-59V7CJ48_PHAVU; Uncharacterized protein
STRINGGLYMA02G06320.16e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.17e-34GATA family protein